Package: sdmtools 0.0.0.9000

Gerry Ryan

sdmtools: Utility tools for Species Distribution Modelling

What the package does (one paragraph).

Authors:Gerry Ryan [aut, cre], David Duncan [ctb], Nick Tierney [ctb]

sdmtools_0.0.0.9000.tar.gz
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sdmtools.pdf |sdmtools.html✨
sdmtools/json (API)

# Install 'sdmtools' in R:

install.packages('sdmtools', repos = c('https://idem-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/idem-lab/sdmtools/issues

Pkgdown site:https://idem-lab.github.io

Datasets:

global_regions - Global regions
raster_to_terra - 'raster' to 'terra' equivalence table

On CRAN:

6.20 score 9 stars 674 scripts 31 exports 91 dependencies

Last updated 1 months agofrom:0ef6d8c394. Checks:3 OK, 4 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 19 2025
R-4.5-win	OK	Jan 19 2025
R-4.5-linux	OK	Jan 19 2025
R-4.4-win	NOTE	Jan 19 2025
R-4.4-mac	NOTE	Jan 19 2025
R-4.3-win	NOTE	Jan 19 2025
R-4.3-mac	NOTE	Jan 19 2025

Exports:%>%assign_nearest_land example_mask example_raster example_vector extract_covariates import_rasts inside_mask make_africa_mask make_mask make_mpp_list make_vector_mask mask_all mask_from_all maskpointsdf match_ref nearest_land new_long_tibble predict_mpp_rast predict_mpp_rast_all predict_sdm rastpointplot save_plot set_layer_names set_levels source_R split_rast standardise_rast std_rast temptif writereadrast

Dependencies:askpass assertthat bit bit64 class classInt cli clipr codetools colorspace cpp11 crayon curl data.table DBI digest dplyr e1071 fansi farver filelock future future.apply generics geometa ggnewscale ggplot2 globals glue gridExtra gtable gtools hms httr isoband jsonlite KernSmooth keyring labeling lattice lifecycle listenv lubridate magrittr malariaAtlas MASS Matrix mgcv mime multispeciesPP munsell nlme openssl ows4R parallelly pillar pkgconfig prettyunits progress proxy purrr R6 rappdirs RColorBrewer Rcpp readr rlang s2 scales sf sodium stringi stringr sys terra tibble tidyr tidyselect tidyterra timechange tzdb units utf8 vctrs viridisLite vroom withr wk XML xml2 yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Assign to nearest raster cell on mask	assign_nearest_land
Create an example mask within a given raster	example_mask
Create example raster for use in examples	example_raster
Create an example vector	example_vector
Extract data from covariate rasters	extract_covariates
Global regions	global_regions
Import rasters from directory	import_rasts
title	inside_mask
Make Mask	make_africa_mask make_mask make_vector_mask
Make presence-only list for 'multispeciesPP'	make_mpp_list
Mask all	mask_all
Create mask from raster layers	mask_from_all
Title	maskpointsdf
match ref	match_ref
Identify nearest land	nearest_land
'long_tibble' constructor function	new_long_tibble
Raster predictions from 'multispeciesPP'	predict_mpp_rast
Raster predictions from 'multispeciesPP' for all species	predict_mpp_rast_all
Predict Species Distribution Model	predict_sdm
Print method for class 'long_tibble'	print.long_tibble
'raster' to 'terra' equivalence table	raster_to_terra
Raster plot with points	rastpointplot
Save plot	save_plot
set layer names	set_layer_names
set levels	set_levels
Source all R scripts in a directory	source_R
Split rasters	split_rast
Standardise Raster	standardise_rast
Standardise raster	std_rast
temptif	temptif
Write and read back 'spatRaster'	writereadrast

Usage by other packages (reverse dependencies)